PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0325s0021.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 221aa    MW: 24149.2 Da    PI: 6.9539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0325s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-193785355
                  AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++GVr ++ +gr++AeIrd ++    ++ ++lg+f+ta+eAa+a++aa+++++g
  Kalax.0325s0021.1.p 37 FRGVRKRP-WGRYAAEIRDpFK----KTGVWLGTFDTADEAARAYDAAARSFRG 85
                         8*******.**********662....5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.6293693IPR001471AP2/ERF domain
PfamPF008471.0E-123685IPR001471AP2/ERF domain
SMARTSM003803.1E-353699IPR001471AP2/ERF domain
CDDcd000182.00E-183693No hitNo description
SuperFamilySSF541711.18E-213794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-293793IPR001471AP2/ERF domain
PRINTSPR003679.9E-103748IPR001471AP2/ERF domain
PRINTSPR003679.9E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSRKYSFPIM RKVKVAAVAG HDHAGPEMRD PESEIRFRGV RKRPWGRYAA EIRDPFKKTG  60
VWLGTFDTAD EAARAYDAAA RSFRGPKART NFPFPSSPPL HPPVTLNPLP PPPLSYHNPA  120
HMFSAQYIHR PASSSMSSTV ETFSGPKLSN PLAALPSTRV LFHQPVPEEG PDCHSDCDSS  180
SSVVNFEEGG AWGVPDLNLP PPMDDADMNC DDLDATALRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-173794361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-173794664ATERF1
3gcc_A3e-173794664ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143195.13e-45PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_008456400.13e-45PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803392e-31ERF82_ARATH; Ethylene-responsive transcription factor 3
SwissprotQ9LDE43e-31ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0V0HV082e-48A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGPGSC0003DMT4000373592e-40(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.19e-21ERF domain protein 11